Doç. Dr. Muhammed Tılahun MUHAMMED

1. Design and synthesis of piperazine-based 3,5-disubstituted-1,2,4-oxadiazole derivatives as dual AChE and BChE inhibitors: In vitro and in silico studies

Faydali N., EROL M., ARPACI Ö., Küçükoğlu K., DİLEK E., MUHAMMED M. T.

Journal of Molecular Structure , cilt.1373, 2026 (SCI-Expanded, Scopus)

2. Synthesis, cytotoxic evaluation and molecular modeling of 5-bromo-2-methoxyphenoxy substituted phthalonitriles and phthalic acids

Şahin S., MUHAMMED M. T., Sunucu-Karafakioğlu Y., AKKOÇ FEIZI DEH NAYEBI S., ODABAŞ Z.

Journal of the Indian Chemical Society , cilt.103, sa.10, 2026 (SCI-Expanded, Scopus)

3. Experimental pKa Determination and Computational Profiling of Benzimidazole Derivatives as Potential Anticancer Lead Compounds

Dereli D. B., MUHAMMED M. T., AKKOÇ FEIZI DEH NAYEBI S., Demiralay E. Ç.

ChemistrySelect , cilt.11, sa.36, 2026 (SCI-Expanded, Scopus)

4. Synthesis, Biological Evaluation, and In Silico Studies of Naphtalene-Hydrazide Derivatives as Dual-Action Agents for Alzheimer's Disease: Targeting BChE and Oxidative Stress

Konyar D., Okur H., MUHAMMED M. T., Kaplan A., Boga M., KILIÇ KURT Z.

ChemistrySelect , cilt.11, sa.36, 2026 (SCI-Expanded, Scopus)

5. Sulfonamide-Based 2-Amino-1,3,4-Oxadiazole Derivatives as Dual Cholinesterase and Carbonic Anhydrase Inhibitors: Design, Synthesis, Kinetic Characterization, Molecular Modeling, and ADMET Evaluation

ARSLAN KARAHAN G., GÖKÇE B., MUHAMMED M. T., AYAN E. K., ÖZÇELİK A. B.

Drug Development Research , cilt.87, sa.6, 2026 (SCI-Expanded, Scopus)

6. Inhibition and Molecular Recognition of Lactoperoxidase by Acetohydrazide-Based Sulfonamide Derivatives

GÖKÇE B., ARSLAN KARAHAN G., MUHAMMED M. T., Albayrak Ö.

Journal of Molecular Recognition , cilt.39, sa.5, 2026 (SCI-Expanded, Scopus)

7. 2-Substituted-5-(4-substitutedsulfonylamido)benzoxazoles as potent cholinesterase inhibitors: Synthesis, in vitro, molecular docking, molecular dynamics simulation, and DFT studies

Faydali N., EROL M., ARPACI Ö., DİLEK E., MUHAMMED M. T.

Journal of Molecular Structure , cilt.1368, 2026 (SCI-Expanded, Scopus)

8. Evaluation of an Integrated In Silico-In Vitro Pipeline for Predicting Mitochondrial Complex I-Mediated Neurotoxicity of Chlorpyrifos

Karakuş F., MUHAMMED M. T., Arzuk E.

Neurotoxicity Research , cilt.44, sa.4, 2026 (SCI-Expanded, Scopus)

9. Eu(III), Tb(III), and Gd(III) Complexes With Dual Ligand Architecture: Synthesis, Characterization, Photoluminescence, Cytotoxic, and Molecular Docking Studies

Sarıoğlu A. O., Sogukomerogullari H. G., MUHAMMED M. T., Mısır B. A., AKKOÇ FEIZI DEH NAYEBI S.

Chemistry and Biodiversity , cilt.23, sa.7, 2026 (SCI-Expanded, Scopus)

10. Phytochemical Profiling and Evaluation of Antioxidant and Enzyme Inhibitory Activities of Selected Endemic Salvia Species (Lamiaceae) From Türkiye

Bulut S., Usta S., Kahraman A., Yilmaz M. A., Cakir O., Muhammed M. T.

FOOD SCIENCE & NUTRITION , cilt.14, sa.7, ss.1-18, 2026 (SCI-Expanded, Scopus)

11. INVESTIGATION OF THE INHIBITION MECHANISM OF SOME HDAC8 INHIBITORS THROUGH COMPUTATIONAL METHODS BAZI HDAC8 İNHİBİTÖRLERİNİN İNHİBİSYON MEKANİZMASININ HESAPLAMALI YÖNTEMLERLE ARAŞTIRILMASI

MUHAMMED M. T., Sarı İ., Şahan S. N.

Ankara Universitesi Eczacilik Fakultesi Dergisi , cilt.50, sa.2, ss.289-300, 2026 (Scopus, TRDizin)

12. Synthesis, Characterization, and Cytotoxic Activity Properties of Some Novel Purine Derivatives

Akdoğan N., Işgüzar A., AKKOÇ S., MUHAMMED M. T., Alhag S. K., Al-Shuraym L. A., et al.

Journal of Biochemical and Molecular Toxicology , cilt.40, sa.5, 2026 (SCI-Expanded, Scopus)

13. Synthesis and characterization of novel 5-fluoroindolylmethylene hydrazone derivatives as schiff base compounds: In vitro and in silico evaluation as potential cholinesterase (AChE and BChE) inhibitors

Koprulu C., Faydali N., Muhammed M. T., Dilek E., Kucukoglu K., Sirinzade H.

JOURNAL OF THE INDIAN CHEMICAL SOCIETY , cilt.103, sa.4, ss.102484-102497, 2026 (SCI-Expanded, Scopus)

14. Exploring enzyme inhibition and antioxidant activities of different Salvia L. species with phenolic profiling and molecular docking

Eruygur N., Bagci Y., Ayaz F., Buyukyildirim T., Faydali N., Bakir M. R., et al.

SOUTH AFRICAN JOURNAL OF BOTANY , cilt.189, ss.131-142, 2026 (SCI-Expanded, Scopus)

15. Anatomical characteristics and bioactivities of Vitis vinifera L. (Cv. Atasarisi) leaves

Kendir G., Erol M., Bulut S., Erzurumlu Y., Kızılyıldırım S., Muhammed M. T.

South African Journal of Botany , cilt.189, ss.466-477, 2026 (SCI-Expanded, Scopus)

16. Acetamido-bridged 2-substituted benzoxazole and N-ethyl piperazine derivatives: Synthesis, antimicrobial evaluation, molecular modeling, and DFT studies

Erol M., Faydalı N., Muhammed M. T., Temiz Arpaci O., Arısoy M., Kuyucuklu G.

JOURNAL OF THE INDIAN CHEMICAL SOCIETY , cilt.103, ss.102328-102358, 2026 (SCI-Expanded, Scopus)

17. Synthesis, characterization and in silico evaluation of non-aggregating, water-soluble zinc(II) Phthalocyanines bearing pyridylpropoxy substituents as potential inhibitors of protein C, PAF acetylhydrolase, and ALDH enzymes

Baş H., Muhammed M. T., Akkoc S., Biyiklioglu Z.

INORGANIC CHEMISTRY COMMUNICATION , cilt.183, sa.Part 2, ss.115872-115883, 2026 (SCI-Expanded, Scopus)

18. Synthesis, structural characterization, DFT calculations, molecular docking, and antimicrobial activity studies of some new oxazolo[4,5-b]pyridine derivatives

Erol M., Faydali N., Kuyucuklu Kazan G., Temiz Arpaci Ö., Muhammed M. T.

JOURNAL OF MOLECULAR STRUCTURE , cilt.1358, ss.145413-145423, 2026 (SCI-Expanded, Scopus)

19. Exploring benzofuran derivatives as selective MAO-B inhibitors: a multilayered in silico study

Mateev E., Irfan A., Kostov S., MUHAMMED M. T., Zlatkov A.

Pharmacia , sa.73, 2026 (ESCI, Scopus)

20. Structure-Based Virtual Screening and Computational Evaluation of Putative Mushroom-Associated Natural Compounds as Janus Kinase 1 (JAK1) Inhibitors: An In Silico Study

Shakoor B., Irfan A., MUHAMMED M. T., Hameed H., Amin A., Ahmad S., et al.

Current Medicinal Chemistry , 2026 (SCI-Expanded, Scopus)

21. Exploring the role of quercetin on doxorubicin and lapatinib-mediated cellular and mitochondrial responses using in vitro and in silico studies

Ergüç A., Albayrak G., MUHAMMED M. T., Karakuş F., Arzuk E., İnce-Ergüç E.

Journal of Chemotherapy , cilt.38, sa.1, ss.32-46, 2026 (SCI-Expanded, Scopus)

22. Purification and biochemical characterization of lactoperoxidase from Jersey bovine milk and kefir: inhibition and molecular modeling

Albayrak Ö., Gökçe B., Muhammed M. T.

PREPARATIVE BIOCHEMISTRY AND BIOTECHNOLOGY , cilt.56, sa.6, ss.933-945, 2026 (SCI-Expanded, Scopus)

23. Synthesis, characterization, docking, MD simulation, and evaluation of antiproliferative effectiveness of new 4-aminobenzophenone derivatives

Musmula M., Sahin D., MUHAMMED M. T., Alhag S. K., Al-Shuraym L. A., AKKOÇ S.

Journal of Computer-Aided Molecular Design , cilt.39, sa.2, 2025 (SCI-Expanded, Scopus)

24. Design, synthesis, in vitro and in silico evaluation of thiazole-hydrazone hybrids as potent and safe α-glucosidase inhibitors

Ergüç A., AYAN E. K., MUHAMMED M. T., ÖZDEMİR A., ALTINTOP M. D.

Bioorganic Chemistry , cilt.167, 2025 (SCI-Expanded, Scopus)

25. Investigation of 2-substituted-5-methylsulfonylbenzoxazole derivatives as potential cholinesterase inhibitors: Synthesis, in vitro, and computational studies

Cihan C., Faydali N., EROL M., ARPACI Ö., MUHAMMED M. T., DİLEK E.

Bioorganic Chemistry , cilt.167, 2025 (SCI-Expanded, Scopus)

26. Antioxidant, Antidiabetic, and Antiobesity Properties of Stachys cretica subsp. anatolica and Its LC-MS/MS Analysis: In Vitro and In Silico Studies.

Bulut S., Toslak R., Muhammed M. T., Kahraman A., Yilmaz M. A.

Chemistry & biodiversity , cilt.22, sa.12, 2025 (SCI-Expanded, Scopus)

27. Cytotoxic activity, molecular docking, and molecular dynamics simulation of new 2-Thioxo-1,3-thiazolidine-4,5-diones as building blocks for functionalization of N[sbnd]Nucleophiles with Oxamide moieties

Unsal S. M., ÜNGÖREN Ş. H., KIBRIZ İ. E., MUHAMMED M. T., AKKOÇ S.

Journal of Molecular Structure , cilt.1345, 2025 (SCI-Expanded, Scopus)

28. Synthesis, Cytotoxicity, Apoptotic Activity, Oxidative Stress Inductive Capacity, and Molecular Interactions of Thymol-Derived Imines

Sahin D., ERZURUMLU Y., MUHAMMED M. T., Alhag S. K., Al-shuraym L. A., AKKOÇ S.

Journal of Biochemical and Molecular Toxicology , cilt.39, sa.11, 2025 (SCI-Expanded, Scopus)

29. Synthesis of New Halo-Substituted Quinolinecarboxaldehyde-Hydrazone Derivatives, Structural Illuminations, Investigation of Effects on Acetylcholinesterase Activity and Molecular Modeling Studies

Sirinzade H., Faydali N., Muhammed M. T., Dilek E.

JOURNAL OF MOLECULAR STRUCTURE , cilt.1351, sa.2, ss.144337-144351, 2025 (SCI-Expanded, Scopus)

30. Integrated experimental and computational study of novel pyrrole derivatives: Microwave-assisted synthesis, enzyme inhibition, antioxidant properties, and neurotoxicity evaluation

Mateev E., Georgiev B., Pavlova E., Irfan A., Muhammed M. T., Momekov G., et al.

LETTERS IN DRUG DESIGN AND DISCOVERY , cilt.22, ss.100205-100223, 2025 (SCI-Expanded, Scopus)

31. Biomedical and computational exploration of rationally designed ciprofloxacin tethered β-amino alcohols as anti-cancer agents

Akhtar R., MUHAMMED M. T., Rasul A., Zahoor A. F., Noreen R., Tabassum H., et al.

Journal of Molecular Structure , cilt.1340, 2025 (SCI-Expanded, Scopus)

32. Synthesis, spectral characterization, antioxidant and antidiabetic activities of transition metal complexes of 4-aminoantipyrine: experimental and theoretical studies

Nawaz Z., Aslam S., Al-Hussain S. A., MUHAMMED M. T., Rani S., Abbasi B. B. K., et al.

Journal of Molecular Structure , cilt.1339, 2025 (SCI-Expanded, Scopus)

33. Synthesis, Antiproliferative Activity Evaluation, and Computational Insights of Benzo[d]imidazol-2(3H)-one Derivatives

Dilek G., MUHAMMED M. T., AKKOÇ S.

ChemistrySelect , cilt.10, sa.33, 2025 (SCI-Expanded, Scopus)

34. Phytochemical profiling, antioxidant potential, and in silico evaluation of Carica papaya seed oil

Khan S., Amin Z. S., Shakoor B., Irfan A., Muhammed M. T., Kotwica-Mojzych K., et al.

Results in Chemistry , cilt.18, ss.102751-102761, 2025 (ESCI, Scopus)

35. SNS pincer type Pd(II), Ni(II), and Fe(II) complexes: Synthesis, structural characterization, cytotoxic activity studies, molecular docking and simulation studies

Sogukomerogullari H. G., Solak S. S., AKKOÇ S., Köse A., MUHAMMED M. T., Sönmez M.

Inorganica Chimica Acta , cilt.584, 2025 (SCI-Expanded, Scopus)

36. Computational insight into synthetic alpha-glucosidase inhibitors: Homology modeling, docking, and molecular dynamics simulation

MUHAMMED M. T., Sari E., İncikuşu Ş., Baştürk T.

Journal of Research in Pharmacy , cilt.29, sa.2, ss.776-789, 2025 (ESCI, Scopus, TRDizin)

37. The antibacterial activity of Cornus mas L. against uropathogenic Escherichia coli strains producing extended-spectrum β-lactamase

KENDİR G., KIZILYILDIRIM S., Kandemir T., MUHAMMED M. T., KÖROĞLU A.

Microbial Pathogenesis , cilt.205, 2025 (SCI-Expanded, Scopus)

38. Imidazol-2-Ylidene-Silver(I) Complexes Bearing 4-Acetylphenyl Side Arm: Design, Synthesis, Characterization, Crystal Structure, and Inhibitory Properties Against Some Metabolic Enzymes

Demirci Ö., Demir Y., GÖK Y., Yakalı G., Taskin-Tok T., MUHAMMED M. T., et al.

Applied Organometallic Chemistry , cilt.39, sa.7, 2025 (SCI-Expanded, Scopus)

39. Cytotoxic activity, caspase-3 mediated apoptosis, and PARP-1 inhibition targeted molecular modeling studies of novel imidazole-fused hydrazones

Tapera M., MUHAMMED M. T., ERZURUMLU Y., Alhag S. K., AKKOÇ S.

Journal of Molecular Liquids , cilt.429, 2025 (SCI-Expanded, Scopus)

40. Investigation of Antioxidant, Antibacterial, and Anticancer Activities, and Molecular Modeling Studies of Berberis crataegina Fruit Extract

Erdoğan Ü., ÖNEM E., Muhammed Tilahun M. T., Soyocak A., AK A., ARIN U. E., et al.

Chemistry and Biodiversity , cilt.22, sa.7, 2025 (SCI-Expanded, Scopus)

41. Synthesis, biological evaluation and molecular modeling studies of quinazolin-4(3H)-one and benzenesulfonamide hybrids as potential anticancer agents

Ayan E. K., Ergüç A., Muhammed M. T., Arzuk E., Soyer Z.

JOURNAL OF THE INDIAN CHEMICAL SOCIETY , cilt.0, sa.0, 2025 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

42. Synthesis, characterization, anticancer effect against lung, breast cancer cell and in silico molecular modeling studies of axial disubstitue silicon phthalocyanine and peripheral tetra substitue cobalt(II), copper(II) phthalocyanines

KELEŞ T., MUHAMMED M. T., AKKOÇ S., OSMANOĞULLARI S. C., BEKİRCAN O., BIYIKLIOĞLU Z.

Inorganic Chemistry Communications , cilt.177, 2025 (SCI-Expanded, Scopus)

43. Novel transition metal (II) complexes of hydrazones as potential antitumor agents: Synthesis, characterization, DFT computations, cytotoxic activities, molecular docking and simulation studies

Sogukomerogullari H. G., Başaran E., Çakmak R., MUHAMMED M. T., AKKOÇ S.

Inorganica Chimica Acta , cilt.581, 2025 (SCI-Expanded, Scopus)

44. Biological and Phytochemical Insights Into Opuntia ficus-indica (L.) Mill: Cytotoxic, Wound-Healing, and Anti-Aging Potentials

KENDİR G., GÜLEÇ M., Öztürk A. B., Torkay G., MUHAMMED M. T., Olgun A., et al.

Food Science and Nutrition , cilt.13, sa.6, 2025 (SCI-Expanded, Scopus)

45. Synthesis, Cytotoxic Activity, Antiquorum Sensing Effect, Docking and Md Simulation of Novel 1,3-Disubstituted 2-Mercapto-1H-Benzo[D]Imidazolium Chlorides

Mavvaji M., MUHAMMED M. T., ÖNEM E., ASLAN H. G., Alhag S. K., AKKOÇ S.

Journal of Biochemical and Molecular Toxicology , cilt.39, sa.4, 2025 (SCI-Expanded, Scopus)

46. In vitro cytotoxic activity, cells staining, DFT computation, docking, and MD simulation of silver N-heterocyclic carbene complexes

BAHAR D., MUHAMMED M. T., AKKOÇ S.

Journal of the Indian Chemical Society , cilt.102, sa.3, 2025 (SCI-Expanded, Scopus)

47. Experimental and theoretical studies on antituberculosis activity of different benzimidazole derivatives

KIZILYILDIRIM S., Sucu B., MUHAMMED M. T., AKKOÇ S., Esatbeyoglu T., ÖZOĞUL F.

Heliyon , cilt.11, sa.4, 2025 (SCI-Expanded, Scopus)

48. Computational assessment of the reactivity and anticancer activity of 1,2,3-triazole-thiazolidinones derivatives: An approach combining DFT calculations, molecular dynamics simulations, molecular docking, and ADMET

Bimoussa A., Hachim M. E., Laamari Y., Geesi M. H., MUHAMMED M. T., Alamri M. A., et al.

Journal of Molecular Structure , cilt.1321, 2025 (SCI-Expanded, Scopus)

49. Design and synthesis of aminothiazole-benzazole based amide: antiproliferative, antimigration activity and molecular docking studies

Arslan Karahan G., Erzurumlu Y., Muhammed M. T., Özçelik A. B.

Medicinal Chemistry Research , cilt.34, sa.2, ss.406-422, 2025 (SCI-Expanded, Scopus)

50. Exploring the Antidiabetic Potential of Pyrimidine-Derived Chalcones: Synthesis, Biological Evaluation, and Molecular Modeling

Fatima M., Aslam S., Fatima A., MUHAMMED M. T., Chaudhry F., Irfan A., et al.

ChemistrySelect , cilt.10, sa.2, 2025 (SCI-Expanded, Scopus)

51. New isoxazoline‐linked 1,3,4‐thiadiazole derivatives: Synthesis, antiproliferative activity, molecular docking, molecular dynamics and DFT

Laamari Y., MUHAMMED M. T., Irfan A., Oubella A., Alossaimi M. A., Geesi M. H., et al.

Journal of Molecular Structure , cilt.1319, 2025 (SCI-Expanded, Scopus)

52. Modification of ionic liquid and lactoferrin-based small molecules as potential therapeutics against SARS-CoV-2: Molecular docking disclosed the predictable results

Senan A. M., MUHAMMED M. T., AKKOÇ S., Alhag S. K., Al-Shahari E. A., Al-Shuraym L. A.

Journal of Molecular Structure , cilt.1319, 2025 (SCI-Expanded, Scopus)

53. Investigation of the antibacterial activity of Rhamnus cathartica L. and its anti-QS potential on Pseudomonas aeruginosa PAO1

IBRAHIM B., Reis A., ARIN U. E., MUHAMMED M. T., ÖNEM E.

Natural Product Research , cilt.39, sa.16, ss.4762-4774, 2025 (SCI-Expanded, Scopus)

54. Mitochondrial toxicity of selected natural compounds: in vitro assessment and in silico molecular docking and dynamics simulation

Ergüç A., Albayrak G., MUHAMMED M. T., Karakuş F., Arzuk E.

Drug and Chemical Toxicology , cilt.48, sa.1, ss.199-209, 2025 (SCI-Expanded, Scopus)

55. Computational Insight into the Dual AXL/MerTK Inhibition Potential of Some AXL Inhibitors

MUHAMMED M. T., Bekteş C., İleri A.

Turkish Computational and Theoretical Chemistry , cilt.9, sa.2, ss.66-76, 2025 (Scopus)

56. Molecular modeling and cytotoxic activity studies of oxirane-2-carboxylate derivatives

MUHAMMED M. T., ER M., AKKOÇ S.

Journal of Biomolecular Structure and Dynamics , cilt.43, sa.18, ss.10597-10608, 2025 (SCI-Expanded, Scopus)

57. Multitargeted molecular docking and dynamics simulation studies of 1,3,4-thiadiazoles synthesised from (R)-carvone against specific tumour protein markers: An In-silico study of two diastereoisomers

Fawzi M., Bimoussa A., Laamari Y., MUHAMMED M. T., Irfan A., Oubella A., et al.

Computational Biology and Chemistry , cilt.112, 2024 (SCI-Expanded, Scopus)

58. In Vitro Activation of Paraoxonase 1 by Steroids: An Experimental, Molecular Docking, and Molecular Modelling Study

Deveci U., Çıkrıkcı K., Kuru A., Yildirim K., MUHAMMED M. T., Gencer N.

ChemistrySelect , cilt.9, sa.35, 2024 (SCI-Expanded, Scopus)

59. Design and Synthesis of New Aminothiazole-Benzazole Based Ureas: Antiproliferative and Antimigration Activity Studies

Arslan G., Erzurumlu Y., Muhammed M. T., Özçelik A. B.

ChemistrySelect , cilt.9, sa.34, 2024 (SCI-Expanded, Scopus)

60. Novel Pyrrole Derivatives as Multi-Target Agents for the Treatment of Alzheimer’s Disease: Microwave-Assisted Synthesis, In Silico Studies and Biological Evaluation

Mateev E., Karatchobanov V., Dedja M., Diamantakos K., Mateeva A., MUHAMMED M. T., et al.

Pharmaceuticals , cilt.17, sa.9, 2024 (SCI-Expanded, Scopus)

61. Targeting COVID-19 and varicocele by blocking inflammasome: Ligand-based virtual screening

Al-Madhagi H., MUHAMMED M. T.

Archives of Biochemistry and Biophysics , cilt.759, 2024 (SCI-Expanded, Scopus)

62. Antibacterial activity of avocado extract (Persea americana Mill.) against aminoglycoside-resistant Klebsiella pneumoniae strains

KIZILYILDIRIM S., Kandemir T., KENDİR G., MUHAMMED M. T., KÖROĞLU A., ÖZOĞUL F.

Food Bioscience , cilt.60, 2024 (SCI-Expanded, Scopus)

63. The antibacterial effect mechanisms of Laurus nobilis extracts on carbapenem-resistant Acinetobacter baumanii isolates

KIZILYILDIRIM S., Kandemir T., KENDİR G., MUHAMMED M. T., KÖROĞLU A., Köksal F., et al.

Food Bioscience , cilt.59, 2024 (SCI-Expanded, Scopus)

64. INVESTIGATION OF THE INHIBITORY POTENTIAL OF SOME ANTIVIRAL AGENTS ON HUMAN TELOMERASE BY MOLECULAR DOCKING AND MOLECULAR DYNAMICS SIMULATION STUDIES

KONYAR D., Muhammed M. T.

Ankara Üniversitesi Eczacılık Fakültesi Dergisi , cilt.48, sa.2, ss.576-585, 2024 (Scopus, TRDizin)

65. Milk thistle extracts could enhance the UV-protection efficiency and stability of mineral filters in sunscreen formulations

Erdoğan Ü., Gökçe E. H., MUHAMMED M. T., ÖNEM E., Erten A. A., Süleymanoğlu B.

Journal of Photochemistry and Photobiology A: Chemistry , cilt.450, 2024 (SCI-Expanded, Scopus)

66. Molecular Docking: Principles, Advances, and its Applications in Drug Discovery

MUHAMMED M. T., Aki-Yalcin E.

Letters in Drug Design and Discovery , cilt.21, sa.3, ss.480-495, 2024 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

67. Isolation and characterization of thymoquinone from Nigella sativa essential oil: antioxidant and antibacterial activities, molecular modeling studies, and cytotoxic effects on lung cancer A549 cells

Erdoğan Ü., Erbaş S., MUHAMMED M. T., ÖNEM E., Soyocak A., AK A.

Journal of Essential Oil-Bearing Plants , cilt.27, sa.3, ss.787-803, 2024 (SCI-Expanded, Scopus)

68. Exploring theophylline-1,2,4-triazole tethered N-phenylacetamide derivatives as antimicrobial agents: unraveling mechanisms via structure-activity relationship, in vitro validation, and in silico insights

Saeed S., Shahzadi I., Zahoor A. F., Al-Mutairi A. A., Kamal S., Faisal S., et al.

Frontiers in Chemistry , cilt.12, 2024 (SCI-Expanded, Scopus)

69. Synthesis, biological application, and computational study of a thymol-based molecule

AKKOÇ S., MUHAMMED M. T.

Journal of Biologically Active Products from Nature , cilt.14, sa.1, ss.35-50, 2024 (ESCI, Scopus)

70. Rifampisin Dirençli Mycobacterium tuberculosis Kompleks Suşları Üzerine Benzimidazolyum Tuzlarının Antimikobakteriyel Etkinliğinin Araştırılması

İnci Y., Kızıl Yıldırım S., Köksal F., Muhammed M. T., Akkoç S.

KSU TARIM VE DOGA DERGISI-KSU JOURNAL OF AGRICULTURE AND NATURE , cilt.27, sa.1, ss.114-119, 2024 (ESCI, TRDizin)

71. Synthesis, characterization, antiproliferative activity, docking, and molecular dynamics simulation of new 1,3-dihydro-2H-benzimidazol-2-one derivatives

AKKOÇ S., Sahin D., MUHAMMED M. T., YILDIZ M., İLHAN İ. Ö.

Journal of Biomolecular Structure and Dynamics , cilt.42, sa.21, ss.11495-11507, 2024 (SCI-Expanded, Scopus)

72. Computational exploration of acefylline derivatives as MAO-B inhibitors for Parkinson’s disease: insights from molecular docking, DFT, ADMET, and molecular dynamics approaches

Irfan A., Zahoor A. F., Boulaamane Y., Javed S., Hameed H., Maurady A., et al.

Frontiers in Chemistry , cilt.12, 2024 (SCI-Expanded, Scopus)

73. Hydrazide-hydrazones as novel antioxidants - in vitro, molecular docking and DFT studies

Mateev E., MUHAMMED M. T., Irfan A., Sharma S., Georgieva M., Zlatkov A.

Pharmacia , cilt.71, 2024 (ESCI, Scopus)

74. TOWARDS UNDERSTANDING NATURAL ALPHA-GLUCOSIDASE INHIBITORS: A COMPUTATIONAL STUDY

Muhammed M. T., Aksoy N., Kırılmaz A., Türkmen E.

ANKARA UNIVERSITESI ECZACILIK FAKULTESI DERGISI , cilt.48, sa.1, ss.205-214, 2024 (Scopus, TRDizin)

75. Synthesis, structure characterization, DFT calculations, and computational anticancer activity investigations of 1-phenyl ethanol derivatives

Senan A. M., MUHAMMED M. T., Al-Shuraym L. A., Alhag S. K., Al-Areqi N. A., AKKOÇ S.

Journal of Molecular Structure , cilt.1294, 2023 (SCI-Expanded, Scopus)

76. Anti-Quorum Sensing Activity of Vitis vinifera L. Seed Extract on Some Bacteria: A Greener Alternative Against Antimicrobial Resistance

Ibrahim B., GÜRAĞAÇ DERELİ F. T., ERZURUMLU Y., ÖNEM E., ARIN E., MUHAMMED M. T.

Erwerbs-Obstbau , cilt.65, sa.6, ss.1931-1939, 2023 (SCI-Expanded, Scopus)

77. Synthesis, Cytotoxic Activity, Docking and MD Simulation of N,N-Disubstituted New Benzimidazolium Salts

Mavvaji M., MUHAMMED M. T., AKKOÇ S.

ChemistrySelect , cilt.8, sa.43, 2023 (SCI-Expanded, Scopus)

78. An Exploration of the Inhibitory Mechanism of Rationally Screened Benzofuran-1,3,4-Oxadiazoles and-1,2,4-Triazoles as Inhibitors of NS5B RdRp Hepatitis C Virus through Pharmacoinformatic Approaches

Irfan A., Faisal S., Ahmad S., Saif M. J., Zahoor A. F., Khan S. G., et al.

Biomedicines , cilt.11, sa.11, 2023 (SCI-Expanded, Scopus)

79. Synthesis, Cytotoxic, and Computational Screening of Some Novel Indole–1,2,4-Triazole-Based S-Alkylated N-Aryl Acetamides

Zahoor A. F., Saeed S., Rasul A., Noreen R., Irfan A., Ahmad S., et al.

Biomedicines , cilt.11, sa.11, 2023 (SCI-Expanded, Scopus)

80. Evaluation of in vitro effect, molecular docking, and molecular dynamics simulations of some dihydropyridine-class calcium channel blockers on human serum paraoxonase 1 (hPON1) enzyme activity

GÖKÇE B., MUHAMMED M. T.

Biotechnology and Applied Biochemistry , cilt.70, sa.5, ss.1707-1719, 2023 (SCI-Expanded, Scopus)

81. Triiodothyronine positively regulates endoplasmic reticulum-associated degradation (ERAD) and promotes androgenic signaling in androgen-dependent prostate cancer cells

ERZURUMLU Y., MUHAMMED M. T.

Cellular Signalling , cilt.109, 2023 (SCI-Expanded, Scopus)

82. Estrogens drive the endoplasmic reticulum-associated degradation and promote proto-oncogene c-Myc expression in prostate cancer cells by androgen receptor/estrogen receptor signaling

ERZURUMLU Y., Dogan H. K., ÇATAKLI D., Aydogdu E., MUHAMMED M. T.

Journal of Cell Communication and Signaling , cilt.17, sa.3, ss.793-811, 2023 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

83. Molecular modeling and in vitro antiproliferative activity studies of some imidazole and isoxazole derivatives

MUHAMMED M. T., ER M., AKKOÇ S.

Journal of Molecular Structure , cilt.1282, 2023 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

84. Computational Insight into the Mechanism of Action of DNA Gyrase Inhibitors; Revealing a New Mechanism

Muhammed M. T., Akı Yalçın E.

CURRENT COMPUTER-AIDED DRUG DESIGN , cilt.20, sa.3, ss.224-235, 2023 (SCI-Expanded, Scopus)

85. Synthesis, DFT Calculations, and Molecular Docking Study of Acetohydrazide-Based Sulfonamide Derivatives as Paraoxonase 1 Inhibitors

ARSLAN G., GÖKÇE B., MUHAMMED M. T., Albayrak Ö., Önkol T., ÖZÇELİK A. B.

ChemistrySelect , cilt.8, sa.10, 2023 (SCI-Expanded, Scopus)

86. 1,25(OH)2 D3 induced vitamin D receptor signaling negatively regulates endoplasmic reticulum-associated degradation (ERAD) and androgen receptor signaling in human prostate cancer cells

ERZURUMLU Y., Aydogdu E., Dogan H. K., ÇATAKLI D., MUHAMMED M. T., Buyuksandic B.

Cellular Signalling , cilt.103, 2023 (SCI-Expanded, Scopus)

87. BTEAC Catalyzed Ultrasonic-Assisted Synthesis of Bromobenzofuran-Oxadiazoles: Unravelling Anti-HepG-2 Cancer Therapeutic Potential through In Vitro and In Silico Studies

Irfan A., Zahoor A. F., Rasul A., Al-Hussain S. A., Faisal S., Ahmad S., et al.

International Journal of Molecular Sciences , cilt.24, sa.3, 2023 (SCI-Expanded, Scopus)

88. Cytotoxic activities of the pyrimidine-based acetamide and isophthalimide derivatives: an in vitro and in silico studies

MUHAMMED M. T., KÖKBUDAK Z., AKKOÇ S.

Molecular Simulation , cilt.49, sa.10, ss.982-992, 2023 (SCI-Expanded, Scopus)

89. Drug design of new therapeutic agents: molecular docking, molecular dynamics simulation, DFT and POM analyses of new Schiff base ligands and impact of substituents on bioactivity of their potential antifungal pharmacophore site

AKKOÇ S., KARATAŞ H., MUHAMMED M. T., KÖKBUDAK Z., CEYLAN A., Almalki F., et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS , cilt.41, sa.14, ss.6695-6708, 2023 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

90. Density functional modeling, and molecular docking with SARS-CoV-2 spike protein (Wuhan) and omicron S protein (variant) studies of new heterocyclic compounds including a pyrazoline nucleus

Akman S., AKKOÇ S., Zeyrek C. T., MUHAMMED M. T., İLHAN İ. Ö.

Journal of Biomolecular Structure and Dynamics , cilt.41, sa.22, ss.12951-12965, 2023 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

91. Biochemical contents and antiquorum sensing, antiproliferative activities of Opuntia ficus-indica (L.) Mill. Peel extract

Önem E., Kendir G., Akkoç S., Erzurumlu Y., Muhammed M. T., Özaydın A. G.

South African Journal of Botany , cilt.150, ss.296-304, 2022 (SCI-Expanded) Sürdürülebilir Kalkınma

98. In Vitro and in Silico Assessment of the Potential of Niaouli Essential Oil as a Quorum Sensing Inhibitor of Biofilm Formation and its Effects on Fibroblast Cell Viability

Önem E., Soyocak A., Muhammed M. T., Ak A.

BRAZILIAN ARCHIVES OF BIOLOGY AND TECHNOLOGY , cilt.64, 2021 (SCI-Expanded, Scopus)

99. Three dimensional structure prediction of panomycocin, a novel Exo-beta-1,3-glucanase isolated from Wickerhamomyces anomalus NCYC 434 and the computational site-directed mutagenesis studies to enhance its thermal stability for therapeutic applications

MUHAMMED M. T., SON Ç. D., Izgu F.

COMPUTATIONAL BIOLOGY AND CHEMISTRY , cilt.80, ss.270-277, 2019 (SCI-Expanded, Scopus)

100. Homology modeling in drug discovery: Overview, current applications, and future perspectives

MUHAMMED M. T., Aki-Yalcin E.

CHEMICAL BIOLOGY & DRUG DESIGN , cilt.93, sa.1, ss.12-20, 2019 (SCI-Expanded, Scopus)

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